BtaEX0002288 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009696 | ACTN2
Description
Bos taurus actinin, alpha 2 (ACTN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034635]
Coordinates
chr28:9417776-9423647:+
Coord C1 exon
chr28:9417776-9417857
Coord A exon
chr28:9421852-9421937
Coord C2 exon
chr28:9423555-9423647
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTTATTTTTCCCTCCCTCAGACA
3' ss Score
9.02
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GATGACCCAATAGGAAATATCAACCTGGCCATGGAAATAGCAGAGAAGCACCTGGATATTCCCAAAATGTTGGATGCAGAAG
Seq A exon
ACATTGTGAACACTCCCAAGCCCGATGAAAGAGCTATCATGACATACGTTTCCTGCTTCTACCATGCTTTCGCGGGCGCGGAGCAG
Seq C2 exon
GCTGAGACAGCGGCTAACAGGATATGTAAGGTTCTTGCTGTGAATCAAGAGAATGAGAGGCTGATGGAAGAATATGAGAGGCTAGCGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009696-'6-10,'6-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAATAGGAAATATCAACCTGGC
R:
CTCACTCGCTAGCCTCTCATA
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development