GgaEX0021203 @ galGal4
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2
Description
Alpha-actinin-2 [Source:UniProtKB/Swiss-Prot;Acc:P20111]
Coordinates
chr3:36972339-36978439:-
Coord C1 exon
chr3:36978358-36978439
Coord A exon
chr3:36973865-36973950
Coord C2 exon
chr3:36972339-36972431
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCCCCAATATTATAGATA
3' ss Score
7.32
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GATGACCCCATAGGAAATATCAACCTTGCCATGGAAATTGCTGAGAAACATCTGGATATCCCTAAGATGTTGGATGCAGAAG
Seq A exon
ATATTGTGAACACTCCCAAACCTGATGAGAGAGCTATCATGACATATGTGTCCTGCTTCTACCATGCTTTTGCTGGAGCAGAGCAG
Seq C2 exon
GCTGAGACTGCAGCAAACCGGATCTGTAAGGTGCTTGCTGTGAATCAAGAAAATGAGAGGTTGATGGAAGAGTATGAGAGACTTGCAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463_MULTIEX1-6/6=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATAGGAAATATCAACCTTGC
R:
ACTTGCAAGTCTCTCATACTCTTCC
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]