GgaEX0021338 @ galGal3
Exon Skipping
Gene
ENSGALG00000014632 | Q5ZJ82_CHICK
Description
NA
Coordinates
chr25:1648701-1649751:+
Coord C1 exon
chr25:1648701-1648817
Coord A exon
chr25:1649039-1649205
Coord C2 exon
chr25:1649657-1649751
Length
167 bp
Sequences
Splice sites
3' ss Seq
AGCAGAGCCTTTCTCCCCAGTCT
3' ss Score
2.44
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGGTGGTGTTCGTGTTGCTCTCAAAATCATTAAAAATGTGGAGAAGTACAAGGAGGCTGCCCGGCTGGAGATCAACGTGCTGGAGAAAATCAACGAGAAGGATCCTGAGAACAAGAA
Seq A exon
TCTCTGTGTCAGGATGTTTGACTGGTTTGACTACCACGGCCACATGTGCATCTCCTTTGAACTGCTGGGGCTCAGCACTTTTGATTTCCTGAAGGACAACAACTATCTGCCTTACCCCATCCACCAAGTGCGGCACATGGCCTTCCAGGTGTGCCAGGCTGTGAAAT
Seq C2 exon
TTCTGCATGACAACAAACTCACTCACACTGACCTCAAACCTGAGAACATCCTCTTTGTCAACTCTGACTATGAGCTCACCTATAACCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTTCGTGTTGCTCTCA
R:
CTTTTCCAGGTTATAGGTGAGCTCA
Band lengths:
210-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]