RnoEX0021831 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188482644-188486213:+
Coord C1 exon
chr2:188482644-188482760
Coord A exon
chr2:188485333-188485499
Coord C2 exon
chr2:188486119-188486213
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTATCTCTCCCCAGCCT
3' ss Score
9.84
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGGCGGAGCACGAGTTGCCCTGAAGATCATTAAGAATGTGGAGAAGTACAAGGAGGCCGCTCGACTAGAAATCAACGTGCTGGAGAAAATCAATGAGAAAGATCCTGACAACAAGAA
Seq A exon
CCTCTGTGTCCAGATGTTTGACTGGTTTGACTACCATGGCCACATGTGTATCTCCTTTGAGCTTCTGGGCCTTAGCACCTTCGATTTCCTCAAAGACAACAACTACCTGCCCTACCCCATCCACCAAGTGCGCCACATGGCCTTCCAGCTCTGCCAGGCCGTCAAGT
Seq C2 exon
TCCTCCATGATAACAAGTTGACACATACGGACCTCAAACCTGAAAATATTCTGTTTGTGAATTCAGACTACGAACTCACCTACAATCTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'14-16,'14-15,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGTTGCCCTGAAGATC
R:
TCTCTAGATTGTAGGTGAGTTCGT
Band lengths:
203-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]