GgaEX0021447 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55671195-55672976:-
Coord C1 exon
chrZ:55672851-55672976
Coord A exon
chrZ:55672306-55672431
Coord C2 exon
chrZ:55671195-55671311
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTTTTATATTTTTGTTATAGATC
3' ss Score
9.09
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
ATATTGACGAGTGCAGTAATGGAGACAATCTCTGTCAGAGAAATGCAGACTGTATCAACAGTCCTGGTAGTTACCGCTGTGAATGTGCTGCTGGTTTTAAACTTTCACCCAACGGTGCCTGTGTTG
Seq A exon
ATCGCAATGAGTGTCTGGAAATTCCTAATGTTTGCAGTCATGGTTTATGTGTGGACATGCAAGGAAGTTACCAATGCATATGTCACAATGGTTTTAAGGCATCTCAAGACCAGACTATGTGCATGG
Seq C2 exon
ATGTTGATGAATGTGAACGCCATCCATGTGGAAATGGAACGTGTAAAAACACTGTTGGATCATATAACTGTCTGTGTTATCCAGGATTTGAATTAACTCATAATAATGATTGTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'54-58,'54-57,55-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGAGTGCAGTAATGGAGAC
R:
AATTCAAATCCTGGATAACACAGACA
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]