MmuEX6001716 @ mm10
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58045269-58048660:-
Coord C1 exon
chr18:58048535-58048660
Coord A exon
chr18:58047925-58048050
Coord C2 exon
chr18:58045269-58045385
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTTCTGTTTTAGATC
3' ss Score
13.86
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACATCGATGAGTGTAGCAACGGCGACAATCTATGCCAACGAAACGCGGACTGTATCAACAGCCCCGGCAGCTACCGCTGCGAGTGTGCGGCCGGCTTCAAACTCTCCCCCAACGGGGCCTGTGTAG
Seq A exon
ATCGCAATGAATGCTTGGAAATTCCTAATGTTTGCAGTCATGGGTTGTGTGTTGATCTGCAAGGGAGTTACCAGTGTATCTGCAACAATGGCTTTAAGGCTTCTCAAGACCAGACCATGTGCATGG
Seq C2 exon
ATGTCGACGAGTGTGAGCGGCACCCGTGCGGAAACGGGACTTGTAAGAACACTGTGGGATCCTACAACTGTCTGTGTTACCCTGGGTTCGAGCTCACTCACAACAACGATTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'49-59,'49-58,50-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGATGAGTGTAGCAACGG
R:
TAGGCAATCGTTGTTGTGAGTGA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types