RnoEX6058862 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53105002-53108319:-
Coord C1 exon
chr18:53108194-53108319
Coord A exon
chr18:53107643-53107768
Coord C2 exon
chr18:53105002-53105118
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTGCCGTTTTAGATC
3' ss Score
11.62
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACATCGATGAGTGCAGCAATGGTGACAACCTGTGCCAACGCAACGCGGACTGCATCAACAGCCCAGGCAGCTACCGCTGCGAGTGTGCGGCGGGCTTCAAGCTCTCCCCCAACGGGGCCTGTGTAG
Seq A exon
ATCGCAATGAGTGTTTGGAGATTCCTAATGTTTGCAGTCATGGGCTGTGTGTTGATTTGCAAGGAAGTTACCAGTGCATCTGCAACAACGGCTTCAAGGCGTCTCAAGACCAGACCATGTGCATGG
Seq C2 exon
ATGTTGATGAGTGTGAGAGGCACCCATGTGGAAACGGGACTTGTAAGAACACTGTCGGGTCCTACAACTGTCTGTGCTACCCTGGCTTCGAGCTCACCCACAACAACGACTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'39-44,'39-43,40-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGATGAGTGCAGCAATGG
R:
CTAGGCAGTCGTTGTTGTGGG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]