GgaEX0026039 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:302167-304003:-
Coord C1 exon
chr2:303867-304003
Coord A exon
chr2:302911-303019
Coord C2 exon
chr2:302167-302280
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCTCCTGGAGCAGCCT
3' ss Score
5.55
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGGGGAAGCTCCAAACCAGCACTGGAAGGTGGAGGGAGAGGACAACTGCCGCCCCGCTTCATCCCGAGAGCTTGCGTCCCCCCCGCGTGCCATCTGGGCCCTGGGGGAACCATGTCTGCGGGGGGGGCTCCCCAG
Seq A exon
CCTGCCCACATCCTGAACCTGCTGCCTTACCCCAGGCTGAATGAAGTGCCCAGGGCTGGACATGAGCTGGGTTCTGCGGGTGCAGAGATCCCCTCTGACCCCTGCACAG
Seq C2 exon
GCTACAGATTTTTCAAGCCCGGTGGCTTGTTCGGTATTAAACAGTCGGAGGAGCCGTTCCCTGAAGGCCAGCAGATGCAGGAGGACAGCAAGATCCTCGTGAGCCCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019714-'0-5,'0-3,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.514 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGGAAGCTCCAAACCAG
R:
GGCTCACGAGGATCTTGCTG
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]