GgaEX0026039 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIR7]
Coordinates
chr2:390618-392477:-
Coord C1 exon
chr2:392318-392477
Coord A exon
chr2:391362-391638
Coord C2 exon
chr2:390618-390731
Length
277 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGTGACACCTCCTAGCAG
3' ss Score
3.01
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGACCCGCAGCCATTTGGAGGAAGTTGGGGAAGCTCCAAACCAGCACTGGAAGGTGGAGGGAGAGGACAACTGCCGCCCCGCTTCATCCCGAGAGCTTGCGTCCCCCCCGCGTGCCATCTGGGCCCTGGGGGAACCATGTCTGCGGGGGGGGCTCCCCAG
Seq A exon
CAGCCGGCTCCTGCACGAGGGAAAAGCCAAGGAAGCGCTCAGGGTGCCATGATGCTGCCAAGCACTTCTGTGCGTGGTGAAAACCCAGAGAACAGAGAAAACCAAACCGAACCAAACCAGAAAAGCGATGGCCAGCTGCTGAAACGCCTCTCCTCTCTCCTGGAGCAGCCTGCCCACATCCTGAACCTGCTGCCTTACCCCAGGCTGAATGAAGTGCCCAGGGCTGGACATGAGCTGGGTTCTGCGGGTGCAGAGATCCCCTCTGACCCCTGCACAG
Seq C2 exon
GCTACAGATTTTTCAAGCCCGGTGGCTTGTTCGGTATTAAACAGTCGGAGGAGCCGTTCCCTGAAGGCCAGCAGATGCAGGAGGACAGCAAGATCCTCGTGAGCCCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004898_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCGCAGCCATTTGGAG
R:
CAGGGGCTCACGAGGATCTT
Band lengths:
268-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]