BtaEX6111053 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003953 | ZNF316
Description
zinc finger protein 316 [Source:HGNC Symbol;Acc:HGNC:13843]
Coordinates
chr25:39008752-39014435:+
Coord C1 exon
chr25:39008752-39008878
Coord A exon
chr25:39009369-39009482
Coord C2 exon
chr25:39012109-39014435
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTCTCTTTGGGCCAGGAT
3' ss Score
7.73
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGCTGGTGACCTTTGAAGACGTGGCTGTGTACTTCTCCCTGGAGGAGTGGGAAAGGCTGGACGCAGAGCAGCGGGAGCTCTACAAGGAGGTCATGCGGGAAAACTATGGGATCCTGGTGTCCTTGG
Seq A exon
GATACCCAGTCCCCAAGCCGGATCTGATCTTCCGGCTGGAGCAAGGAGAGGAGCCGTGGGTCCCGGACAGCCCGCGTCCCGAGGAGGGAGACATCGTCACTGGCGTCTACACAG
Seq C2 exon
GGGCCTGGTTCTGGACCGACGACATAGAGGACCACGAGGAGGATGACGACGAAGACTTCCTGGCAGAGGTGGCAGAGGAGGAGAACGAGCCCCCGGGGCTGTGGTCAGCGGCCTACGGAGTGGGCGATGTGCCTGGGACCTGGGGCCCTGATGACTCGGATTCTGCGCAGACTCCGGAGGGCTGGGGTCTGGACCCCGGGGGGCTCGGGGTCCTGGCCCCGGGATCTGAGTCGAAGCCCTTTCTGCCGGACCGGGAGCCGGGTGCAAGCCTCCTGGCGCCCTGGGCATTCCCGGCCGCGGTGGCCGTGCCAGCTGGGCGCCCGGAGACAACGTGCGATGTGTGCGGCAAGGTGTTCCCACACCGGTCCCGGCTGGCAAAGCACCAGCGCTATCACGCGGCGGTCAAGCCCTTCGGCTGCGACGAGTGCGGCAAGGGCTTCGTATACCGCTCGCACCTGGCCATCCACCAGCGCACGCACACCGGCGAGAAGCCCTTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003953-'2-6,'2-4,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.538 C2=0.470
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTGGGAAAGGCTGGA
R:
CGCAGAATCCGAGTCATCAGG
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]