GgaEX0026203 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:27451123-27452924:-
Coord C1 exon
chr8:27452809-27452924
Coord A exon
chr8:27452347-27452479
Coord C2 exon
chr8:27451123-27451484
Length
133 bp
Sequences
Splice sites
3' ss Seq
TAACACTTGATTTTCTGAAGCCC
3' ss Score
3.34
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
ACGTCATCTGCTCCATCACCTTTGGCAATTGGTTTGAGTACCATGATAAGGACTTCCAAAACTTGCTGCAGCTGATGGATGAGACTGCTACCTTCTATGGGAAGATAATGAACCAG
Seq A exon
CCCAATGGCAGTGACTTCTGTGGGGATAACCTGGTGTTGTGCACTCTTGACCTGTTTTTTGCTGGGACTGAAACCACCTCTACAACCATCCGCTGGGCCCTGCTGTTTATGGCCATATATCCAGAAATTCAAG
Seq C2 exon
ACACACACCTCTGCTATGATGATCCTTGCCTTTCTAATATTCTAATAGCAAGAGACAAAAGGGGCAAACTCAACAACAAGCACTGGAGATGCCTGAAGGCATTCTGGCAGACGTGACAGATGCACTGCACAGAGCAGAGGGCCCACTTAGTAGTTGACGATGCAAGCACACAAATGCCCTGGTAACACATGATTGACATGGGATGATCCTTGAGGGTGCCTCACTTGGGGTTGCCCACTGCCATATTAGTGAACAGTAGACCCTTCCTTAGCAATGACCATGCAGCCACCTCAAAGCACCACCACCACCACCTCTTAGGCCTTTCTTCACAAACACAGGAGACTACAGAAATGCTGGAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020625-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(20.0=85.7)
A:
PF0006717=p450=FE(73.3=100)
C2:
PF0006717=p450=PD(3.3=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCATCACCTTTGGCAA
R:
TCTGTGCAGTGCATCTGTCAC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]