GgaEX0026661 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79354450-79356990:+
Coord C1 exon
chr1:79354450-79354576
Coord A exon
chr1:79355212-79355333
Coord C2 exon
chr1:79356939-79356990
Length
122 bp
Sequences
Splice sites
3' ss Seq
GACTGATTTATTTCCTCCAGGGC
3' ss Score
8.72
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GTCAGCGTGATTCTGGCTCAGTCTACTCAATTTCTGGCTACTCCAGTGGAAAAGGAGGAAGACTCTCATTGTCTCTGTGAGAACGGGAGGAAAACAGTGGCTTGGCTGGTGACTCCCAAATCTCTAG
Seq A exon
GGCTGGTGGAGTTCTTGGTGAGCACTGAGGCCCTCCAGAACCAGCAGCCATGCAGAAACACCACAGTGGAGACCCCTGAAAAAGGGCGGAAGGACACAGTCATCAGGCAGCTGTTGGTGGAG
Seq C2 exon
CCTGAAGGAGTTGAGAAGGAAACTGTTCAGAACTTGGTGCTCTGTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'33-35,'33-34,34-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.293 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCGTGATTCTGGCTCAG
R:
CTTTTAAACAGAGCACCAAGTTCT
Band lengths:
179-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]