BtaEX6024108 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101325097-101327284:+
Coord C1 exon
chr5:101325097-101325220
Coord A exon
chr5:101325567-101325688
Coord C2 exon
chr5:101327233-101327284
Length
122 bp
Sequences
Splice sites
3' ss Seq
TACTGGTCCCCATTTTCTAGGGA
3' ss Score
7.72
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTCAGTGTGCAACTAGAAGCCTCTCCTGCATTCCTAGCTGTTCCAGAAAAGGAACAAGAGACTTATTGCATCTGTGGGAATGGCCGGCAGACTGTGTCCTGGGCGGTAACTCCAAAGTCCTTAG
Seq A exon
GGAATGTGAATTTCACAGTGAGTGCAGAGGCAGTGGAGTCTCAAGAGCTATGTGGGAGTGAAGTGCCTGTGGTCCCTGAGCATGGAAGGAAAGACACAATCATCAAGCCCCTGTTGGTTGAA
Seq C2 exon
CCTGAAGGACTAGAGAAGGAAGTAATATTCAACTCCCTGCTTTGTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'19-25,'19-23,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCAACTAGAAGCCTCTCC
R:
CTGATGGACAAAGCAGGGAGT
Band lengths:
172-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]