DreEX6014876 @ danRer10
Exon Skipping
Gene
ENSDARG00000075737 | A2ML1 (6 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:133061-133519:-
Coord C1 exon
chr3:133399-133519
Coord A exon
chr3:133203-133324
Coord C2 exon
chr3:133061-133112
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTCTGTTGTGTAGGAA
3' ss Score
8.91
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
GTTCAAGTGACTCCAACGCCATCCTCCAACTTCACTCTAAACTCTCTTGATCAGTCTTCATCCACTCTCGTTGCCAATGGGAGAAAGACCTTCAAATGGGCTTTAACTGCTTCTGTTATTG
Seq A exon
GAACTGTAAATGTGACCATCAGTGCCCAGGCTAACCCATCCCAGGAACTGTGTGGTAATCGGGTTGTGACTGTACCATCAAGAGGACGCATTGACATAGTCACTCGTAGTCTGCTGGTTCTG
Seq C2 exon
GCTGAAGGAGTCAAAAGAACTTTCACCCGGAGTTGGTTACTCTGTCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075737-'19-21,'19-20,21-21=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAGTGACTCCAACGCCA
R:
CCTTTGGACAGAGTAACCAACT
Band lengths:
173-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]