GgaEX0026992 @ galGal3
Exon Skipping
Gene
ENSGALG00000024350 | F1NKE5_CHICK
Description
NA
Coordinates
chr16:258383-259052:+
Coord C1 exon
chr16:258383-258655
Coord A exon
chr16:258736-258837
Coord C2 exon
chr16:258952-259052
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACAACGGCGCTCTCCTCCAGAGC
3' ss Score
6.69
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGCGGCCCAAGGTGCGAGTGTGGGGGAAGGAGGCCGACGGGATCCTGACCTTGTCCTGCCACGCTCACGGCTTCTACCCGCGGCCCATTGCCATCAGCTGGATGAAGGACGGCATGGTCCGGGACCAGGAGACTCGCTGGGGGGGCATTGTGCCCAATAGGGATGGCACCTACCACGCCTCGGCTGCCATTGATGTGCTGCCGGAGGACAGGGACAACTACCGGTGCCGCGTGGAGCACGCCAGCCTGCCCCAGCCTGGTCTCTTCTCATGGG
Seq A exon
AGCCGCTGCCCAACCTGATCCCCGGTGGGGCTGGGGCAGTCGTCACCATTGTGTTTGTCATCGCTGCTGTCGTTGGATTGGAGGTGTGGAAGAGAAAGTCAG
Seq C2 exon
GGAAGGAGAAGAAGGATTACGAAGCAGCAGCAGGTGAATGCCAAGGGCAGAACTGTCCCCTGCCAGTGCTTGGGGTCAGGGCACTCTGGGGCCCCTCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024350-'6-4,'6-3,7-4
Average complexity
S
Mappability confidence:
86%=100=67%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTCACGGCTTCTACC
R:
ACCTGCTGCTGCTTCGTAATC
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]