GgaEX0027016 @ galGal4
Exon Skipping
Gene
ENSGALG00000024479 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr25:2074448-2076346:+
Coord C1 exon
chr25:2074448-2074556
Coord A exon
chr25:2075146-2075325
Coord C2 exon
chr25:2076146-2076346
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTATTCGTTTCTGTTTGAAGCCC
3' ss Score
7.81
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGATTTCCCGTGCGGAACGTGCGGCCTGTGCAAAACACGATGAATCAAGTGGGAATTGTCCTGAATGTACAGCAGGGTCAGACAGTCAGACCCATCACCCTTGTCCCAG
Seq A exon
CCCCAGGTACACAGTTTGTCAAGCCAGCAGTTGGCGTTCCTCAGGTGTTCTCCCAGGTGGCCCAGGTGAGACCAGGTACGACCATGCCGGTCCGACCCACCACCAACACTTTCACTACGGTCATTCCGGCCACGCTCACCATCAGGAGCACAGTGCCGCAGTCCCAGTCACAACAGCAAA
Seq C2 exon
TGAGCATCGCGAGCTTTGTGACCGTAAAGAGACCCGGAGTGACTGGTGAGAACAGCAATGAGGTTGCCAAGCTGGTGAACACCCTGAATACTGTTCCCTCGTTGGGGCAGAGCCCCGGACCAATGGTGGTGTCCAACAGCAGCCCTGTGCACGGCTCCCAGAGATCCAGCACGTCGGAGTCATCATCATCGTCGTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.770
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGAATGTACAGCAGGG
R:
ATGATGATGACTCCGACGTGC
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]