MmuEX0036138 @ mm10
Exon Skipping
Gene
ENSMUSG00000038902 | Pogz
Description
pogo transposable element with ZNF domain [Source:MGI Symbol;Acc:MGI:2442117]
Coordinates
chr3:94862422-94864667:+
Coord C1 exon
chr3:94862422-94862530
Coord A exon
chr3:94864088-94864378
Coord C2 exon
chr3:94864458-94864667
Length
291 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTCTCTTTTAAAAGCCC
3' ss Score
8.06
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GGATTTCCTGTAAGGAATGTTCGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGTGCTGAACGTACAGCAAGGCCAAACAGTTAGACCAATTACATTGGTCCCAG
Seq A exon
CCCCAGGTACACAGTTTGTTAAGCCGACAGTTGGCGTCCCACAAGTGTTCTCTCAGATGACCCCCGTGAGGCCAGGCTCCACAATGCCTGTGAGGCCCACCACCAACACCTTTACCACCGTCATCCCAGCTACTCTCACCATCCGAAGCACTGTCCCACAGTCCCAGTCCCAGCAGACCAAGTCCACCCCCAGTACCTCCACTACTCCCACTGCCACACAACCAACCTCACTGGGGCAGCTAGCTGGTCAGCCTCCAGGCCAGTCCAACCAGACCTCGAATCCCAAACTAG
Seq C2 exon
CTCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGGGTTACAGGTGAAAATAGCAACGAAGTGGCCAAATTGGTGAATACTCTTAACACTGTCCCTTCCCTGGGCCAGAGTCCTGGGCCCGTGGTGGTGTCCAACAACAGTTCTGCTCAAAGAACCAGTGGGCCCGAATCTTCAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038902_MULTIEX1-5/7=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.941 C2=0.930
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGCCTGTACAAAATGCA
R:
TTTCACTGAAGATTCGGGCCC
Band lengths:
300-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types