GgaEX0027168 @ galGal4
Exon Skipping
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1344901-1347667:+
Coord C1 exon
chr11:1344901-1345008
Coord A exon
chr11:1346252-1346415
Coord C2 exon
chr11:1346799-1347667
Length
164 bp
Sequences
Splice sites
3' ss Seq
CACCTGTCCCTGTCTCGCAGAGC
3' ss Score
10.43
5' ss Seq
TGAGTACGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
GCCTTGCCCCAAGAGCATTCTCAGCAGTGCGTCCAGCCTGAGGCTCAGCCTGTCCAGCCCCCCAGCTGAGAAGGAGCCCCCCAGCGTCGGGGAGAGGAGTGTCTACAA
Seq A exon
AGCTCGCTTCTTGGAGAACCTGGCTGCTGCCCAGAAGGAGAAGATGTCTGCCATGGCAAAGGGACGGATCGACATCCTCAGCGATGTTGCACCACTGGAGCATCCCGTCACTTGGGATGGGGACGGCAGTAACCCTGATGCTGGCACAGAACCACCCCGCATGA
Seq C2 exon
GGTCCCACGCAGGCCGGCAGGACGTCTTTGACTCCTGTAGCACCATATCTGATACCAAGTTCATGCTGGACATGCTCTATGCCAAGGGCTCCTCGGAGCCAGGGAGGCAGAAGGTCTTCCCCGAGGAGCCATCATTGTCCCCGCACCACGGAGAGGTGGAGACGGACGCAGGGTCCAGCTGTGCCGAGGGACCTGGTGGTCAGGAACAAGAGAGTGCCCGGCCCCACGGCAGGGCTCCAGACGGGCTGGTGGCTAGTGCCCACGCCAAGCTGGCACGTGCTGCATCCAGCATCGATGCTGAGAGCCACACGCAGAAGCTGGAGAACACCGTCATGATGCCTGTCAAGAACGACGTGGAGTTGTCGTGGGAGCGCCTGGAGGCTGGCCCCGTGCAACTGAAAATCAAGGACCTGGACTTCACTGACCTGGGGGAGGAAGAGGACTTGGACGTCTTGGACTCGGGACCTATTGCCAATGGCTCCTTCCTTCCTGGCAGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198-'14-19,'14-17,17-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.893 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(17.3=22.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGGAGAGGAGTGTCTAC
R:
GGGCACTCTCTTGTTCCTGAC
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]