RnoEX0035991 @ rn6
Exon Skipping
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37289032-37292162:-
Coord C1 exon
chr19:37291986-37292162
Coord A exon
chr19:37290427-37290542
Coord C2 exon
chr19:37289032-37289323
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGACATGCACCTCTCTTCAGAGC
3' ss Score
7.87
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCCAACAGGCTCTGCCTCTCCAGTAGGCTCCGCCTCCTTCACTGACTCCACCTCGCCTACAAGTTCGGCCTTCAGCCCTACTGGCCCAGCCTCTGGTCTTCATACCTCAGTGAACCTCTTTCCTACCATTTCTGTGGGGCCCTCAGTGGACACTTCCTGTGAGAGAAGTGTCTACAA
Seq A exon
AGCCCGGTTTCTGGAGAATGTGGCAGCAGCAGAGACAGAGAAGCAGGCTGCTCTGGCCCAAGGCCGAGCAGAGACGCTGGCAGGGGCAACAGTGGATGAGACAGATGAGTCATCAG
Seq C2 exon
GCACCAGGGAACTGTGGGACTCTTCAGAGCCAGCCTCTGCACCCAGACCACCTCAGAGCCCTGTTTCCCCAATCGTGCTGCGGACCCAGAGAAGTCTTGAGCCTGAGCCCAAGGAGCCAGTGTCACCACGAAGCCCTAAGACTGAGCCTGTCCAGGAGCTTCCTACTCACGTACCCAAGCTCTGCATTGGAGACTTGGACTTCTCAGATCTAGGGGAGGATGAAGACCAGGACACATTGAATGTGGAATCTGTGGAGGCTGGAAAAGCATCCCTGGTCCTGTCACTTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625-'12-28,'12-27,17-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.925 C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCTCTCCAGTAGGCTC
R:
GATTGGGGAAACAGGGCTCTG
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]