DreEX0032781 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34321049-34330048:+
Coord C1 exon
chr7:34321049-34321141
Coord A exon
chr7:34326271-34326407
Coord C2 exon
chr7:34329956-34330048
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCGGTGCTTTACAGAGA
3' ss Score
7.8
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
AGCGTCTTTCTCAGAAACGGATTCTGCTCCGGAGACTCCAACTCAGACGACAGCAGATCAGCCCAGCCGGACAGTGGGAAAGAGAGTCTTCAA
Seq A exon
AGACACGTTTTTGCGTTCTCTGGCTGTATCCGAGTGGGAGAAAACGAAGAAGTCGTCCGCCTTACAAGAGAAACCGAGTGAGAGTGAGGCACCCACTGAGACTGAGGAGCAGATCTCCCTCTCCACCACCACAACAG
Seq C2 exon
AATCTATTAGTGGTCAGGAGTCTCAAGGGGAGAACGTGAGCAGGCACACCCTGGAGCAGCCAGAGGACACGACGACAGCCCACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.714 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTCTTTCTCAGAAACGGA
R:
CTGCTTCATTGTGGGCTGTCG
Band lengths:
186-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]