DreEX0032779 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34321049-34323851:+
Coord C1 exon
chr7:34321049-34321141
Coord A exon
chr7:34321731-34321754
Coord C2 exon
chr7:34323807-34323851
Length
24 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTCTCCTTTTACAGACA
3' ss Score
11.48
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AGCGTCTTTCTCAGAAACGGATTCTGCTCCGGAGACTCCAACTCAGACGACAGCAGATCAGCCCAGCCGGACAGTGGGAAAGAGAGTCTTCAA
Seq A exon
ACAGCAGCAGGCAGACAGTGTTTG
Seq C2 exon
TCCAGAGAGTGTGAATAGAGACTTGCCGGTTCTCAGGCATTATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.750 C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000073447fB2757
Main Skipping Isoform:
ENSDART00000073447fB2758
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGCTCCGGAGACTCCAA
R:
CATAATGCCTGAGAACCGGCA
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]