BtaEX0014629 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34981015-34982906:-
Coord C1 exon
chr18:34982691-34982906
Coord A exon
chr18:34982535-34982558
Coord C2 exon
chr18:34981015-34981240
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCTTTCTTTCCAGACT
3' ss Score
10.82
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTCCACAGGCCCCGCCTCTCCGGTCGTCTCCACCTCCGCTGCCAGCCCGGTCCTGCCAACCAGCCCCACCTCCTGCCCCGTAGGCCCCGCCTCACCTCCAAGCCCCGCCTCCAGCCCCGTGGGCCCTGCCTCTGGCCTCCATAGCACCTTGAGACTCTTTCCTAGCGTCTCCGTGGCGCCCTCATCCGACAGCTCCTGTGAAAGGAGCGTCTACAA
Seq A exon
ACTTCACCAAACTGCTCCTGTTTG
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTAGCAGCAGCAGAAACAGAAAAGCAGGCTGCGCTGGCCCAGGGCCGGGCAGAAACATTGGCCGGTGCCATGCCGGATGATATGGACGGGTGTCCAGGTGAGTGGGTAGGTGGGCAGTATCCACCCACGTTGCCCTGTTGCTCTAGAGAAGACATGACACTGACAGCTGCTTCCCTTTGTCTAGACACCCGAGAATCAAGGTACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-4/15=3-6
Average complexity
C2
Mappability confidence:
100%=100=93%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=0.125 C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000063472fB2784
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTTCCTAGCGTCTCCGT
R:
CGCAGCCTGCTTTTCTGTTTC
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development