BtaEX0014630 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34981015-34982558:-
Coord C1 exon
chr18:34982535-34982558
Coord A exon
chr18:34982092-34982145
Coord C2 exon
chr18:34981015-34981240
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCATCCCCCCCGACCCAGGGC
3' ss Score
6.92
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
ACTTCACCAAACTGCTCCTGTTTG
Seq A exon
GGCCCCTGAGAGCCCACCTGTCCCCCAGGTCCCTACTGGGGAGGCCAGGCTGGA
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTAGCAGCAGCAGAAACAGAAAAGCAGGCTGCGCTGGCCCAGGGCCGGGCAGAAACATTGGCCGGTGCCATGCCGGATGATATGGACGGGTGTCCAGGTGAGTGGGTAGGTGGGCAGTATCCACCCACGTTGCCCTGTTGCTCTAGAGAAGACATGACACTGACAGCTGCTTCCCTTTGTCTAGACACCCGAGAATCAAGGTACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-5/15=4-6
Average complexity
C2
Mappability confidence:
98%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.331 C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000063472fB2784
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACCAAACTGCTCCTGT
R:
CCGTCCATATCATCCGGCATG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development