MmuEX1010460 @ mm10
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105334687-105336260:-
Coord C1 exon
chr8:105336237-105336260
Coord A exon
chr8:105335825-105335878
Coord C2 exon
chr8:105334687-105334802
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTCTCATCCCCCTACCCAGCTC
3' ss Score
5.51
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ACTTCACCAAACTGCTCCCGTTTG
Seq A exon
CTCCCCTGAGAGTCCACCTGTCCCCCAGTCCCTTCCTGGGCAGGCCAGGCTAGA
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTGGCGGCAGCAGAGACGGAGAAGCAGGCTGCTCTGGCCCAAGGCCGAGCGGAGACGCTGGCTGGAGCCACGGTAGATGACACTGATGGATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'18-23,'18-22,19-23
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=1.000 C2=0.941
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000014922fB10095
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCAAACTGCTCCCGTT
R:
TCCATCAGTGTCATCTACCGTG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types