DreEX0032780 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34321049-34326407:+
Coord C1 exon
chr7:34321049-34321141
Coord A exon
chr7:34323807-34323851
Coord C2 exon
chr7:34326271-34326407
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTGGAGTGTTTCTCTTCAGTCC
3' ss Score
4.79
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AGCGTCTTTCTCAGAAACGGATTCTGCTCCGGAGACTCCAACTCAGACGACAGCAGATCAGCCCAGCCGGACAGTGGGAAAGAGAGTCTTCAA
Seq A exon
TCCAGAGAGTGTGAATAGAGACTTGCCGGTTCTCAGGCATTATGC
Seq C2 exon
AGACACGTTTTTGCGTTCTCTGGCTGTATCCGAGTGGGAGAAAACGAAGAAGTCGTCCGCCTTACAAGAGAAACCGAGTGAGAGTGAGGCACCCACTGAGACTGAGGAGCAGATCTCCCTCTCCACCACCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.688 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000073447fB2758
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGCTCCGGAGACTCCAA
R:
TCTCTTGTAAGGCGGACGACT
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]