HsaEX0025762 @ hg19
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:17905]
Coordinates
chr16:67268260-67270337:-
Coord C1 exon
chr16:67270314-67270337
Coord A exon
chr16:67269919-67269972
Coord C2 exon
chr16:67268260-67268375
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTCATCCCCCCTACCCAGGGC
3' ss Score
8.55
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
ACTTCACCAAACTGCTTCCGTTTG
Seq A exon
GGCCCCTGAGAGCCCACCCGTCCCCCAGTCCCCTCCTGGGCAGGCCAGGCTGGA
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTGGCGGCAGCAGAAACAGAGAAGCAGGTTGCGCTGGCCCAGGGCCGGGCAGAGACACTTGCCGGGGCCATGCCCAATGAGGCGGGTGGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'17-18,'17-17,18-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=1.000 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACCAAACTGCTTCCGT
R:
GTGTCCACCCGCCTCATTG
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)