HsaEX0025762 @ hg38
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67234357-67236434:-
Coord C1 exon
chr16:67236411-67236434
Coord A exon
chr16:67236016-67236069
Coord C2 exon
chr16:67234357-67234472
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTCATCCCCCCTACCCAGGGC
3' ss Score
8.55
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
ACTTCACCAAACTGCTTCCGTTTG
Seq A exon
GGCCCCTGAGAGCCCACCCGTCCCCCAGTCCCCTCCTGGGCAGGCCAGGCTGGA
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTGGCGGCAGCAGAAACAGAGAAGCAGGTTGCGCTGGCCCAGGGCCGGGCAGAGACACTTGCCGGGGCCATGCCCAATGAGGCGGGTGGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'18-30,'18-28,19-30
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=0.000 C2=0.911
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000568595fB2730
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACCAAACTGCTTCCGT
R:
GTGTCCACCCGCCTCATTG
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development