HsaINT0064148 @ hg38
Intron Retention
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67234357-67236733:-
Coord C1 exon
chr16:67236557-67236733
Coord A exon
chr16:67234473-67236556
Coord C2 exon
chr16:67234357-67234472
Length
2084 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TGACAAGCACCTTCCCTCAGAGC
3' ss Score
4.8
Exon sequences
Seq C1 exon
CCCCACAGGCCCCGCCTCACCGGTAGGCCCCACCTCTTCCACCGGCCCCGCCCTGCTGACAGGCCCCGCCTCCAGCCCTGTGGGCCCTCCCTCCGGTCTCCAAGCTTCAGTGAACCTTTTTCCTACCATCTCTGTGGCACCCTCAGCTGACACCTCCAGCGAGAGGAGCATCTACAA
Seq A exon
GTAAGTAGGGAGACAGAGGCCACCCTGGAGTCCTCTCTCCCATTGTCCCTCCGCTTTGCGCCCCTCCATGGGCACTCAGCCTCCTCTGCCCAAACGCGTGCTTTCTCTCTCTCTCTTTCCAGACTTCACCAAACTGCTTCCGTTTGGTAAGTGACTGCCAGCGGGTGGGGTTCGGCTCTGACTGGATCTCCTCCTCCTGTGGTTTCCTTTGTCTCCTCCGACGTTCTGCCTGTCTTTGCCTCTTGTCATGTCTCCCGCCCACTATCTGTCACTCCCTTGTTCTGCTGCCTCTGTCTCTTCCAGCACCCTGTCCTGCTCCACGTCAGTCTCTCCCCTCCACTTCCAGTTTCCTCGTGTCATACCTTCCCCCACTTCCCACTGCGGCTGGGAAGGAACCCCAATATCACTGCCTAGCTCTGTGTGGGTATGAGCAACCATGGAGCTGACACCACAGTTACCATCTCTTCCTCTCATCCCCCCTACCCAGGGCCCCTGAGAGCCCACCCGTCCCCCAGTCCCCTCCTGGGCAGGCCAGGCTGGAGTAAGTACAGAGGCCGGCCTGCCAGGCCTGCCATGTGCTCAGGGCTTCAGCATTGCTTCCCCCAGCAGGGGTTTCACGTGCCTGATGCAACCAAAGCTGGGGGACTCAGGCCTATCCTCTCCCAGACATATGCCTCCTCGGTAACCCAAAGGCTAAGCACTGGGAACCAATTCACTGGGGTCACAGTGGTCCCTGTGCTTCAATAGCAACACCTTAGCAGCCAGAGATGGGGATGTGGACACCCAACCTGGGGCTCATTCTGCCAAGTCTTCAGCTCAGAAGCGAGCAGGGAGGGGACCTAGGGTGCTGTGTGGTGTGTGGTGTGGGGGTGGAGGGGTAACCTAAGGCTGAGGGAAAGGCAGGGACTGAGAGCTGACAGAGGCTGGAGGGGCCAGAAAAGAAACACTGGATTGCACCCATTATTTCAGCATAAACTGAGGGTCCACTGTTTACCACATCCGTTTTTTTTTTGTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCGGTCTCCAAGGCTGGAGTGCAGTGGTGTGATCTCAGCACACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAGGCCTGCACCAGGATACCTGGGTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACTTCAAGTAATCCACCCACCTCTGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACCGCACCTGGCCTGTTTACCAGGCCCTTTCCTGGGCATAGGCTCCCAGAAGCTACCAGACATGCCAAGGGAGGGACAGCCTGATATGCCCATTGGGACAGCTATCCCCTTCCCCTGCTCTAAGAGTCCTTGTCTAGACTCAAGACACCAGCCTGGGCAACACAGTAAGACCTCATCTCTACAAAGAAATTTTTTAAAATTTGGCTGGGTGCATCATTCACACCTGTAATCTCAGCACTTCAGGAGGCTGAGGTGGGAGGACTGCTTGAGGCCAGGAATTCAAGGCCAGCCTGAACAACACAGTGAGACCCTGTCTCCTCAAAAAAATTAAAAAATCAGCTGGACGTGGTGGCACATGTCTGTAGTCCCAGCTACTTGGGAGGCTGAGGGTCAAGCCCAGGAGAGTGAGGCTGCAGTGAGCTATGATCACACCACTGTACTCCAGCCTGGGTGACTGACAGAGTGAGACCCTGTCTCTAAAAAAAAAACCAACCAAAAAAAAACCAGGACAGTGAACATGAACGAGGTTGCAAGTTAGATGTTAAGTAGATCCTCTCCCTGTGTTTTCACCTGGGAATGCTGGGTTGGTAGTAATCCTCCCCAGATGTGGAGGACTGAAGAGGGGCTGGCCTTGGGGGGGGTGTGGTTCTGGTCTGCTCAGCGCATGGACTGTTCCCTGTGTGTCTGTGCGTGCCTGCAATTGGGGGTGGTGTCCAGGGGCTCAGCAAGGCATGTACACCTGGGCTGGGGTGTGTCAGACGCTGTCAGTGACAAGCACCTTCCCTCAG
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTGGCGGCAGCAGAAACAGAGAAGCAGGTTGCGCTGGCCCAGGGCCGGGCAGAGACACTTGCCGGGGCCATGCCCAATGAGGCGGGTGGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723:ENST00000258201:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=0.911
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development