BtaINT0062505 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34981015-34982906:-
Coord C1 exon
chr18:34982691-34982906
Coord A exon
chr18:34981241-34982690
Coord C2 exon
chr18:34981015-34981240
Length
1450 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TGACAAGTTCCTCCCCCCAGAGC
3' ss Score
7.92
Exon sequences
Seq C1 exon
CTCCACAGGCCCCGCCTCTCCGGTCGTCTCCACCTCCGCTGCCAGCCCGGTCCTGCCAACCAGCCCCACCTCCTGCCCCGTAGGCCCCGCCTCACCTCCAAGCCCCGCCTCCAGCCCCGTGGGCCCTGCCTCTGGCCTCCATAGCACCTTGAGACTCTTTCCTAGCGTCTCCGTGGCGCCCTCATCCGACAGCTCCTGTGAAAGGAGCGTCTACAA
Seq A exon
GTAAGTAGGGAGATAGAGGCTGTCGTGGGAGACTTCTCTCCATCTGTCCCTCCTCTCTGCGCCCTTCCACGGGCCCTCCGCCTCCTCTGCCCGAACTTCTCTGCCAAACGCGTGCTTTCTCTTTCTTTCCAGACTTCACCAAACTGCTCCTGTTTGGTAAGTGACTGCTGGGGGGTGGGGTTCGGCTCTGACTGGACCTCGTCCTTCTGCGGCTTTTCTTCATCTCTTTCTGGCATTCCACCTGTATTGTCAATGTCATCTGTCTCTCTACCCCCTTCTGTCTCAGTTTCTCTGTCACTGTCTGTGACTCTCTCATTTCGCTGTCTTTGTCTTTTACTGCACCCTGTCCTGCGTCATGTCCGTCTCTCCTCTCCATTTCCAGTTTCCTCGCATCACGCCTCCCCCACTCCCTCCTATTCCCATTGTGACTGGGAAGGGACCCCTGATATCACTGCCCGGCTCTGTGTGGGTGTGAGCAACTGGGCACTGTGGGGTGGAGCAGGCACCACAGTTACCATTTCTTCCTCTCATCCCCCCCGACCCAGGGCCCCTGAGAGCCCACCTGTCCCCCAGGTCCCTACTGGGGAGGCCAGGCTGGAGTAAGTACAGAGGCCAGCCTGCCAGGCCTGCCATGTGCTCAGGGCTTCAGCATTGCTTCCCCCAGCGGGGGTTCCATGTGCCTGATGCAACCAGAGCTGGGGGGCTCTCTCAGACTTATGCCTCCTCAGATACCCAAGAACTAAGCACTGGAAAACAGCTCACTGGGGTCATAGAGGTCCCTGTGCTTTAACCGTGGCACCTTAACAGCTTTGACCAGTGATGAGGATGTGAATTCCCAACCTGGAGCTGATTCTGGATCCTCAGCCCAGGATTAGTGCTGGGAGGGACCTAGGGTGCTACGCAGTGCGGAGGTGGAGGAGCAACCTCTGTCTAAGGGCAGGACAGAGACTGAGTGCCAGCAGAGGCTGGAGGGGCCAAAAGAGACGGGATCACCTTCATTATGTCAACATAAACTGAGCGCCTGTCATTTACCAGGCCCCTTTCTAGGCATCGGTCATGGCTCTTGGAAGCTGCCAGACCTGCCAAGGGAGGGACAGCCTGGTGTGGCCATTGGGACAGCTAGCCCCTTCCCCTGCTCTAAGGGTCCTTGTCTAGAATCAGAACAGTGAGCATGAGCATGAACAACAGCAAGACTGCAAGTTAGATGTCACGTAAAAGTTTTCCCATTTGTTGACCTAGGAGTACTGGGTTGGTAGCGACCTCCCCAAACGTGGAAGACTGAATGGGGACTGGCCTTTGGCAGATCCTGGTCTGCTCAGCGCATGGACGGTTCCCTGTGTGTCTGTGTGTGCCTGCAAGTAGGGGCAGTGCCCAGGGGCCCAGCAAGGCATGCGCACCACCCTGGGCTGGGGTATGTCAGACACCTTCACTGACAAGTTCCTCCCCCCAG
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTAGCAGCAGCAGAAACAGAAAAGCAGGCTGCGCTGGCCCAGGGCCGGGCAGAAACATTGGCCGGTGCCATGCCGGATGATATGGACGGGTGTCCAGGTGAGTGGGTAGGTGGGCAGTATCCACCCACGTTGCCCTGTTGCTCTAGAGAAGACATGACACTGACAGCTGCTTCCCTTTGTCTAGACACCCGAGAATCAAGGTACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=NA C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCGGTCGTCTCCAC
R:
GATACTGCCCACCTACCCACT
Band lengths:
342-1792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development