RnoINT0061034 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37290427-37292162:-
Coord C1 exon
chr19:37291986-37292162
Coord A exon
chr19:37290543-37291985
Coord C2 exon
chr19:37290427-37290542
Length
1443 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TGACATGCACCTCTCTTCAGAGC
3' ss Score
7.87
Exon sequences
Seq C1 exon
CCCAACAGGCTCTGCCTCTCCAGTAGGCTCCGCCTCCTTCACTGACTCCACCTCGCCTACAAGTTCGGCCTTCAGCCCTACTGGCCCAGCCTCTGGTCTTCATACCTCAGTGAACCTCTTTCCTACCATTTCTGTGGGGCCCTCAGTGGACACTTCCTGTGAGAGAAGTGTCTACAA
Seq A exon
GTAAGTAGGGAGGTCGAGCCCCACCCCCCAAGTCCTGTCTCCCACTGTCCCTCCACTTTGTGCGCCTCCACAGGCTCTCAGCCTCCTCTGCCCAAACGCTGTGCTTTCTCTTTCTTTTCAGACTTCACCAAACTGCTCCCATTTGGTAAGTGACTGCTGGAGGGTGAGGATTGGCCTGGATGGGGCCTCCTCCTCCCGTGGCTTCTCTTTATTTCTTTCCAGTGTTCTACTCACCTGCCTTGGCCTCTTGTCATGTCTCCCTCTTCACTTTCTATTCTTCTGTTTCTGTCCCTCCTTTTGTGTGCCGGTTTTGTTACCACTGCACCCTGTCCAGCTTCCTGTCCGTTTATCCCATGCCCTGCCACCCCTAGGCCTCTCTCCTTACCACTGTGGATGGGAAGGCACTGCCCAGCTCTGTAGGGGTGCAACAAGTGGGCCTTGGACTGGAGTTGGCACCATAGTTACCATGTCTTCCTCTCATCCCCCTACCCAGCTCCCCTGAGAGTCTACCTGTCCCCCAGTCCCTTACTGGGCAGGCCAGGCTAGAGTAAGTACAGAGGCCAATCTGTCAGGCTTGCCGTGTGCTCAGGGCTTCAGCATCGCTTACCCAGCAGCACTTCATGTAGCCACCCTAGGAGGATTCTCAGGAATTCTTCCTTCCAGACTTACGCTTCCTCAGTAGCCCAGAGACTTAACCACTGGGCAGTTTACTGGATCATAGTGGTCCCTAAGCTTCAATAGTGATACCTGAGTAGCTTAGGCTAGAGATGTGGATGTGGACAGACTGAGTGTGGATGAATTTGGAGAGGTATTTAAAGTGAGGTGGGGTGGTGGTGGTACGAGTCAGGAAGTAAACTAATGGGGGCACATGCCTTGTAATTCCAGCACTTGGTGGGTGGGGCAGAGCCAGGATCAGGAGTTCAAGGTCATTTTCAGCTACATAGTGAGTTTGGGTTAGTCTGGCTTATGTGAGACTTTGTCTCAAAAAAAAGAGATTGAGGAGAAGAGAGGAAGGGAAGACAGTAATAGATCATATTCATATTTCAGCACAAACAGAGTGCACATTGTTAACAGACCCTCTTCTTGATTGTAACTCTCAAAAGCAGACAGACATGTAAGAAGTCTGTTGTGCCTGTTGGGACAGCTATCTTCCTCCCTTGTCTAAGTGTCTAGAATCGGGAGAATGAACATAGAGTCCGGCAAGGTTTCAAGTTAGATGTCAAGTAGAACTTCTGTACACCAAGAACACCAAGTTAGTTGTAACTCCTGGGATGTGGGGCCAGGCCTTGGTGGGTTAGCAGAGGTAGCCCTACTGCATGAACTGTTCCCCGGGCCTGTGTGTGCTTGCACCTGAGGGCAGTGCCCAGTGGCTCAGCAAGGCATGTGTACCACCCTGGGCTGGATTTGGCTCGGACACCATCACTGACATGCACCTCTCTTCAG
Seq C2 exon
AGCCCGGTTTCTGGAGAATGTGGCAGCAGCAGAGACAGAGAAGCAGGCTGCTCTGGCCCAAGGCCGAGCAGAGACGCTGGCAGGGGCAACAGTGGATGAGACAGATGAGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=NA C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGCCTCTCCAGTAGG
R:
CTGATGACTCATCTGTCTCATCCAC
Band lengths:
286-1729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]