RnoEX0036001 @ rn6
Exon Skipping
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37290427-37292162:-
Coord C1 exon
chr19:37291986-37292162
Coord A exon
chr19:37291841-37291864
Coord C2 exon
chr19:37290427-37290542
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCTTTCTTTTCAGACT
3' ss Score
11.5
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCAACAGGCTCTGCCTCTCCAGTAGGCTCCGCCTCCTTCACTGACTCCACCTCGCCTACAAGTTCGGCCTTCAGCCCTACTGGCCCAGCCTCTGGTCTTCATACCTCAGTGAACCTCTTTCCTACCATTTCTGTGGGGCCCTCAGTGGACACTTCCTGTGAGAGAAGTGTCTACAA
Seq A exon
ACTTCACCAAACTGCTCCCATTTG
Seq C2 exon
AGCCCGGTTTCTGGAGAATGTGGCAGCAGCAGAGACAGAGAAGCAGGCTGCTCTGGCCCAAGGCCGAGCAGAGACGCTGGCAGGGGCAACAGTGGATGAGACAGATGAGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.375 C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000084734fB5558
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACCATTTCTGTGGGGCC
R:
CTGCTTCTCTGTCTCTGCTGC
Band lengths:
103-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]