MmuEX0019231 @ mm10
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105336059-105336561:-
Coord C1 exon
chr8:105336382-105336561
Coord A exon
chr8:105336237-105336260
Coord C2 exon
chr8:105336059-105336159
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTCTCTCTTTTCAGACT
3' ss Score
12.96
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTCTACAGGCTCCGCCTCACCAGTAGGCTCCACCCCCTCCACTGGCTCCGCCCCGCCTACAAATCCAGCCTTCAGCTCTACTGGCCCAGCCTCTGGCCTTCTTCGAACCTCAGTGAACCTCTTTCCTACCATTTCCGTGGGGCCGTCAGTGGACAGTTCCTGTGAGAGAAGCGTCTACAA
Seq A exon
ACTTCACCAAACTGCTCCCGTTTG
Seq C2 exon
TGTTCCACCTCACCTGCCTTGGCCTCTTGTCATGTCTCCCTCTTCACTCTCTCCTTTCGTTTCTGTCCCTCCTTTTGTGCGCAGTCTTTGTGATCCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'17-21,'17-20,18-21
Average complexity
C3
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.874 A=0.375 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000014922fB10095
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGTGGACAGTTCCTGTG
R:
CGCACAAAAGGAGGGACAGAA
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types