HsaEX0025769 @ hg38
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67235969-67236733:-
Coord C1 exon
chr16:67236557-67236733
Coord A exon
chr16:67236411-67236434
Coord C2 exon
chr16:67235969-67236069
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTCTCTCTTTCCAGACT
3' ss Score
12.61
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCCACAGGCCCCGCCTCACCGGTAGGCCCCACCTCTTCCACCGGCCCCGCCCTGCTGACAGGCCCCGCCTCCAGCCCTGTGGGCCCTCCCTCCGGTCTCCAAGCTTCAGTGAACCTTTTTCCTACCATCTCTGTGGCACCCTCAGCTGACACCTCCAGCGAGAGGAGCATCTACAA
Seq A exon
ACTTCACCAAACTGCTTCCGTTTG
Seq C2 exon
GGCCCCTGAGAGCCCACCCGTCCCCCAGTCCCCTCCTGGGCAGGCCAGGCTGGAGTAAGTACAGAGGCCGGCCTGCCAGGCCTGCCATGTGCTCAGGGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'17-28,'17-27,18-28
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=0.458 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000568595fB2730
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATCTCTGTGGCACCCTC
R:
TACTTACTCCAGCCTGGCCTG
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development