GgaEX0027216 @ galGal4
Exon Skipping
Gene
ENSGALG00000000817 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:HGNC:28043]
Coordinates
chr11:19175526-19181819:+
Coord C1 exon
chr11:19175526-19175611
Coord A exon
chr11:19179429-19179648
Coord C2 exon
chr11:19181694-19181819
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTTTATTTTCCAGAAC
3' ss Score
10.5
5' ss Seq
AAGGCAGTT
5' ss Score
-1.32
Exon sequences
Seq C1 exon
CCTCTGCTGAGGGAACGAACAGACTGTGCTCCCAGGTCAGGGAAACATGTCCCGTCGGAAACAGACCACTCCTAACAAAGTTCACT
Seq A exon
AACATCTGAGAGTTATCCTGCATTCATACAGTTCAAGAAGGGAAGGGCTAAGGAAAATAATCATTTCTGGCTGCCAACCTGATACACCATCAGATCGTAGCAGTCATAACTGCCCCTGTTGCACAGTACCACAGGGCTGGCCCCTACCTCCACAGCTGCTCTCCTGGCATCCCACTCATTTGCAAGATTATGGAGAGGAGAACTGGAAAGCAAAGCAAAG
Seq C2 exon
GGGAGCAAGTCTTTGCGGGGCTGGAGGAGCAAGCCCGCCAAGCCATGATGAAAAACAGCTTTCCTGGAGCTCTTGGGGACCAAAGGCCAGCTATTCATCCACTGCAAGACCGCGATTTCAGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817_MULTIEX1-2/3=C1-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAGGGAACGAACAGAC
R:
CTGAAATCGCGGTCTTGCAGT
Band lengths:
204-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]