GgaEX1066391 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr11:19177663-19179529:+
Coord C1 exon
chr11:19177663-19177856
Coord A exon
chr11:19179149-19179294
Coord C2 exon
chr11:19179429-19179529
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATTGTTGTTTTTCATTTCAGTAA
3' ss Score
7.69
5' ss Seq
CAAGTAGGG
5' ss Score
3.87
Exon sequences
Seq C1 exon
CCTGCTGTGTATCTGGAGGGCCCAGAATTGCCATGCAGTGCACTGGTGAATGACGAGGAAAATCGGAGAGAGCATCATCTCCAAGATCTGGGTGAGCCAGCAGAATGATGAATCAGGCTGAGACATAGCAGGCACGTTACTGAAACTTCTTGGGACTGAAATTGTTGGGAGGAGAGGAATAAAAGGGACAGCAG
Seq A exon
TAACCGCTACAGCAGTGTGGACAACCCAGAATAGCGATGGGGCAGGTGGATTAGATCCACAGTGGTGGACAGACTTGCAAATTTCAGGTCCAGGAAAGGAACACAGAGAAGACCTACATGAACAGGGACCTTAAATTGATGTACAA
Seq C2 exon
AACATCTGAGAGTTATCCTGCATTCATACAGTTCAAGAAGGGAAGGGCTAAGGAAAATAATCATTTCTGGCTGCCAACCTGATACACCATCAGATCGTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817-'5-4,'5-3,6-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGCCATGCAGTGCACTG
R:
CAGGTTGGCAGCCAGAAATGA
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]