GgaEX0027574 @ galGal3
Exon Skipping
Gene
ENSGALG00000008936 | F1NV60_CHICK
Description
NA
Coordinates
chr17:1318926-1320237:+
Coord C1 exon
chr17:1318926-1319043
Coord A exon
chr17:1319663-1319813
Coord C2 exon
chr17:1320078-1320237
Length
151 bp
Sequences
Splice sites
3' ss Seq
CACAAGGTGCTCTGTTGCAGGAT
3' ss Score
6.16
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTACGTCTACCAGTGGTCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAGGTGGAGTCCTGCACTGTGAATG
Seq A exon
GATCTGGCATTTCCAGCTATGCAGATAACCCCGCTGGAGCTGGAGCCAGCCTGAAGCCCTGCCTGGCCAAGGCCATGACAGTCATCCCTGCGGAGCAGCAAGGGGAGACACCCACCTACCTGGGGGCCACAGCGGGCATGCGGCTGCTGAG
Seq C2 exon
GGAGCAGAACAGCACAAAAGCTGAGCAGGTCTTTGCTGAGGTCAGCAAGGCCATTCGTGAGTTCCCTGTGGACTTCCGCGGAGCTCAGATCCTCACCGGGAATGAGGAGGGCTCCTTCGGCTGGATCACCATCAACTACCTGCTGGAGACACTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008936_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
PF0115012=GDA1_CD39=FE(11.6=100)
C2:
PF0115012=GDA1_CD39=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACGGCTCTCTACGTCTA
R:
AGTGTCTCCAGCAGGTAGTTGA
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]