HsaEX6064297 @ hg38
Exon Skipping
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr9:137436869-137438084:-
Coord C1 exon
chr9:137437967-137438084
Coord A exon
chr9:137437159-137437309
Coord C2 exon
chr9:137436869-137437028
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTCCCCGGCTGCTGTTCCAGGGC
3' ss Score
7.74
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTTGGGATCGTGTTTGATGCGGGCTCCTCCCACACGTCCCTCTTCCTGTATCAGTGGCTGGCGAACAAGGAGAATGGCACGGGTGTGGTCAGCCAGGCCCTGGCCTGCCAGGTGGAAG
Seq A exon
GGCCTGGAATCTCCTCCTACACTTCTAATGCTGCACAGGCTGGTGAGAGCCTGCAGGGCTGCTTGGAGGAGGCGCTGGTGCTGATCCCAGAGGCCCAGCATCGGAAAACACCCACGTTCCTGGGGGCCACGGCTGGCATGAGGTTGCTCAG
Seq C2 exon
CCGGAAGAACAGCTCTCAGGCCAGGGACATCTTTGCAGCAGTCACCCAGGTCCTGGGCCGGTCTCCCGTGGACTTTTGGGGTGCCGAGCTCCTGGCCGGGCAGGCCGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGGCTTGGGGACGCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-'4-6,'4-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.012
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.1=100)
A:
PF0115012=GDA1_CD39=FE(15.5=100)
C2:
PF0115012=GDA1_CD39=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGATCGTGTTTGATGCGG
R:
ATCCAACCAAAGGCACCTTCG
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains