GgaEX1004116 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJE7]
Coordinates
chr17:937328-940291:-
Coord C1 exon
chr17:940156-940291
Coord A exon
chr17:938316-938466
Coord C2 exon
chr17:937328-937487
Length
151 bp
Sequences
Splice sites
3' ss Seq
CAAGCTTGACTCTCTTCCAGGGC
3' ss Score
6.89
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGCCTTCCCATGATGTTCGTTAACAAGAAGCTCTTCACCACCGCCCTCCTCGGGCTGCTGGTCACACTGTCCATCATCGCCCTCATCCTCAGCCTGGTGAGGGTTGAAGATGTCACTCTGCCACCCACAGTCCAG
Seq A exon
GGCCAGGCATATCAAGCTATGCCGATGATCCCCCAAAAGCTGGTGATTCCCTAAGAGAGTGCCTGGATGAAGCCCTGAAGGTCATTCCTGCTGCAAAGCAGAGGGATGTCTCAGCTTACTTCGGAGCGACAGCAGGCATGAGGCTACTGAG
Seq C2 exon
GGAACAGAACAGCTCAGCTGCAGACCGAGTCCTGGCCGAAATTGCTAAAACCATACAAGAGTATCCTGTGGCTTTCTGTGGGGCACAGATCATTACAGGAGAAGAGGAGGGAGCTTATGGTTGGATCACCATCAACTACCTGCTGGAGTCCTTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.6=16.7)
A:
PF0115012=GDA1_CD39=FE(11.5=100)
C2:
PF0115012=GDA1_CD39=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTTCCCATGATGTTCGT
R:
AAGCTCCCTCCTCTTCTCCTG
Band lengths:
252-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]