GgaEX1004116 @ galGal3
Exon Skipping
Gene
ENSGALG00000021274 | F1NJE7_CHICK
Description
NA
Coordinates
chr17:1329029-1331023:-
Coord C1 exon
chr17:1330906-1331023
Coord A exon
chr17:1330017-1330167
Coord C2 exon
chr17:1329029-1329188
Length
151 bp
Sequences
Splice sites
3' ss Seq
CAAGCTTGACTCTCTTCCAGGGC
3' ss Score
6.89
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
TACGGGATGGTGTTTGATGCAGGCTCATCCCACACCTCTCTGTTTGTCTACGAGTGGGACTCGGACAAGCAGAACAACACCGGTGTGGTCAGCCAGACCTTGTCCTGTGATGTCCAGG
Seq A exon
GGCCAGGCATATCAAGCTATGCCGATGATCCCCCAAAAGCTGGTGATTCCCTAAGAGAGTGCCTGGATGAAGCCCTGAAGGTCATTCCTGCTGCAAAGCAGAGGGATGTCTCAGCTTACTTCGGAGCGACAGCAGGCATGAGGCTACTGAG
Seq C2 exon
GGAACAGAACAGCTCAGCTGCAGACCGAGTCCTGGCCGAAATTGCTAAAACCATACAAGAGTATCCTGTGGCTTTCTGTGGGGCACAGATCATTACAGGAGAAGAGGAGGGAGCTTATGGTTGGATCACCATCAACTACCTGCTGGAGTCCTTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
PF0115012=GDA1_CD39=FE(11.7=100)
C2:
PF0115012=GDA1_CD39=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCCCACACCTCTCTGT
R:
GGTGAAGGACTCCAGCAGGTA
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]