GgaEX0027591 @ galGal3
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5766523-5774728:+
Coord C1 exon
chr17:5766523-5766727
Coord A exon
chr17:5768160-5768195
Coord C2 exon
chr17:5774489-5774728
Length
36 bp
Sequences
Splice sites
3' ss Seq
CGTGTTTTTCTCCTGCACAGGAG
3' ss Score
9.62
5' ss Seq
TAGGCAGGG
5' ss Score
-1.23
Exon sequences
Seq C1 exon
CGCTCTGCTGCGCTCGGATGGGTGGGGCTCTCCCTTCCCCCGACGATTTTTTCCGAACCACTTCGGCACTTTCCGCCAGTCGGGAGTCCGTTCTGCGGCGCTGACGTCATCTCCTGCCGCTTGTATAAAAGGCAGCGCCGGCGGCGCGCCGTGTCCGTAGCGGAGGGGCGGCGGGCGCGGAGGCGGAGGACTGCGCGCGGAGCCG
Seq A exon
GAGGAGGAAAGCAGGAGGAGCCGTGCATCTCCTTAG
Seq C2 exon
AAAATGGATCCAAGTGGGGTAAAAGTGTTGGAAACAGCAGAAGATATCCAAGAACGGCGTCAGCAGGTTTTGGACCGTTACCACAGGTTCAAGGAGCTGTCTTCTCTGAGGCGCCAAAAACTCGAAGATTCCTATCGGTTCCAGTTCTTCCAGCGCGATGCAGATGAGCTGGAAAAATGGATCCAAGAGAAACTCCAGATAGCATCTGATGAAAATTACAAAGACCCAAGCAATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.097
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043516=Spectrin=PU(33.7=48.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTGTATAAAAGGCAGCGC
R:
CCAACACTTTTACCCCACTTGGA
Band lengths:
119-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]