GgaEX0006460 @ galGal3
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5766523-5774728:+
Coord C1 exon
chr17:5766523-5766727
Coord A exon
chr17:5769284-5769334
Coord C2 exon
chr17:5774489-5774728
Length
51 bp
Sequences
Splice sites
3' ss Seq
GATTTCCCCCTCCCTTTTAGACT
3' ss Score
9.15
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
CGCTCTGCTGCGCTCGGATGGGTGGGGCTCTCCCTTCCCCCGACGATTTTTTCCGAACCACTTCGGCACTTTCCGCCAGTCGGGAGTCCGTTCTGCGGCGCTGACGTCATCTCCTGCCGCTTGTATAAAAGGCAGCGCCGGCGGCGCGCCGTGTCCGTAGCGGAGGGGCGGCGGGCGCGGAGGCGGAGGACTGCGCGCGGAGCCG
Seq A exon
ACTCTGCATTCCTCCATCATGTTGTCATCGTTTCGTAAAGTCAAAGTCCAG
Seq C2 exon
AAAATGGATCCAAGTGGGGTAAAAGTGTTGGAAACAGCAGAAGATATCCAAGAACGGCGTCAGCAGGTTTTGGACCGTTACCACAGGTTCAAGGAGCTGTCTTCTCTGAGGCGCCAAAAACTCGAAGATTCCTATCGGTTCCAGTTCTTCCAGCGCGATGCAGATGAGCTGGAAAAATGGATCCAAGAGAAACTCCAGATAGCATCTGATGAAAATTACAAAGACCCAAGCAATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.097
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043516=Spectrin=PU(33.7=48.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTGTATAAAAGGCAGCGC
R:
GCCGTTCTTGGATATCTTCTGCT
Band lengths:
146-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]