BtaEX0034474 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99113351-99131769:+
Coord C1 exon
chr11:99113351-99113562
Coord A exon
chr11:99124123-99124256
Coord C2 exon
chr11:99131530-99131769
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTATTCATGTATCTTTCAGGAT
3' ss Score
9.81
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CTCGCGCCGCGCCAGGGAGCTTCCCCCGCGCTCGCGCCCGCCCGCCGCAGGAACGCGCGCGGCCGCCTATAAAAGGGGCGGGGCGCGCGCGTCGCCGCCACTACCCGCTGCGGAAGGGAACGGCGAGGAGCCGAGGCCGCCGAGCCCCGTCAGTTCCCCCAGCACCCCCGCCCCCGGCCCGACGCACCCACTGCCCTCACCCCCAGGAGCCG
Seq A exon
GATCTGTGTTCTTCGTTTTGAAATCACTGTGTTCAGTTTGCCCTTAGAAGCTTGTTATCTTGCTCTCCCTGCTCCCTCTTTAGACACCACATTCTTCCATCATGCTGTCATCGTTTCGTAAACGCAGAGTCCAG
Seq C2 exon
AAAATGGACCCAAGCGGGGTCAAAGTGCTGGAGACAGCAGAGGACATCCAGGAGAGGCGGCAGCAGGTCCTGGACAGATACCACCGCTTCAAGGAGCTCTCGACCCTGAGGCGCCAGAAGCTTGAAGACTCCTACCGATTCCAGTTTTTCCAAAGAGATGCTGAGGAGCTGGAGAAATGGATTCAGGAGAAGCTTCAGATTGCCTCAGATGAGAATTACAAAGACCCAACCAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.177
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043516=Spectrin=PU(33.7=44.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCCGCCTATAAAAGGG
R:
GCTCCTTGAAGCGGTGGTATC
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development