GgaEX0006460 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5139901-5147917:+
Coord C1 exon
chr17:5139901-5139916
Coord A exon
chr17:5142473-5142523
Coord C2 exon
chr17:5147678-5147917
Length
51 bp
Sequences
Splice sites
3' ss Seq
GATTTCCCCCTCCCTTTTAGACT
3' ss Score
9.15
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACTGCGCGCGGAGCCG
Seq A exon
ACTCTGCATTCCTCCATCATGTTGTCATCGTTTCGTAAAGTCAAAGTCCAG
Seq C2 exon
AAAATGGATCCAAGTGGGGTAAAAGTGTTGGAAACAGCAGAAGATATCCAAGAACGGCGTCAGCAGGTTTTGGACCGTTACCACAGGTTCAAGGAGCTGTCTTCTCTGAGGCGCCAAAAACTCGAAGATTCCTATCGGTTCCAGTTCTTCCAGCGCGATGCAGATGAGCTGGAAAAATGGATCCAAGAGAAACTCCAGATAGCATCTGATGAAAATTACAAAGACCCAAGCAATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.179
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043516=Spectrin=PU(33.7=44.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]