MmuEX0044724 @ mm10
Exon Skipping
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29965560-29978616:+
Coord C1 exon
chr2:29965560-29965785
Coord A exon
chr2:29968776-29968826
Coord C2 exon
chr2:29978377-29978616
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCCTTCCTCTTTAGAGT
3' ss Score
11.06
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GGAGCAGCGAGTCCCGCCTCTCGCGTCGCCAACCGGGGCACTTCCCTCACGCTCGCGCTCGGCCGCCGCGGGGGCGCGCGCGGCCGCTTATAAAAGCCACAGTGCGCGCGCGCCGCCGTCACTATCCGCTGCGGAGCGAACGGCGTGAGGCAGGGGCCGCGGCGGCGCATCTTTTTCCTCAGCAGCCCTCAGCGCGGCGACCCACGCCCCTCACCCCCAGGAGCCG
Seq A exon
AGTCCACATTCCTTCAACATGTTGTCATCGTTTCGTAAGCGCAGAGCTCAG
Seq C2 exon
AAAATGGATCCAAGTGGGGTCAAAGTGCTGGAAACAGCCGAGGACATCCAGGAGAGACGACAGCAAGTCCTGGATCGGTACCACCGCTTCAAGGAGCTCTCTACCTTACGGCGTCAGAAGCTGGAGGATTCCTATCGGTTCCAGTTTTTTCAAAGAGATGCTGAGGAGTTGGAGAAGTGGATTCAGGAGAAGCTTCAAGTTGCATCTGATGAGAACTACAAAGACCCAACCAACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.364 C2=0.178
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0043516=Spectrin=PU(33.7=44.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCCTCAGCAGCCCTCAG
R:
TACCGATCCAGGACTTGCTGT
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types