RnoEX0085744 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8534440-8547585:+
Coord C1 exon
chr3:8534440-8534544
Coord A exon
chr3:8537349-8537399
Coord C2 exon
chr3:8547346-8547585
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCCTTCCTCTTCAGAGT
3' ss Score
11.28
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATATCCGCTGCGGAGCGAACGGCGTGAGGCAGGGGCCGCGGCGGCGCATCTTTTTCCTCAGCAGCCCTCAGCGCGGCGACCCACGCCCCTCACCCCTAGGAACCG
Seq A exon
AGTCCACATTCCTTCAACATGTTGTCATCGTTTCGTAAACGCAGAGTTCAG
Seq C2 exon
AAAATGGATCCAAGTGGGGTCAAAGTGCTGGAAACAGCCGAGGACATCCAGGAGAGACGACAGCAGGTTCTGGATCGGTACCACCGCTTCAAGGAGCTCTCTACCTTGCGGCGGCAGAAACTGGAGGATTCCTATCGCTTCCAGTTTTTTCAGAGAGATGCTGAGGAGCTGGAGAAGTGGATTCAGGAGAAGCTTCAAGTTGCCTCTGATGAGAACTACAAAGACCCCACCAACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0043516=Spectrin=PU(33.7=44.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCCTCAGCAGCCCTCAG
R:
TACCGATCCAGAACCTGCTGT
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]