RnoEX0085742 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8534442-8547585:+
Coord C1 exon
chr3:8534442-8534544
Coord A exon
chr3:8538543-8538550
Coord C2 exon
chr3:8547346-8547585
Length
8 bp
Sequences
Splice sites
3' ss Seq
TCTTCATCTGAATTTTGCAGGTT
3' ss Score
9.06
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATCCGCTGCGGAGCGAACGGCGTGAGGCAGGGGCCGCGGCGGCGCATCTTTTTCCTCAGCAGCCCTCAGCGCGGCGACCCACGCCCCTCACCCCTAGGAACCG
Seq A exon
GTTGAAAG
Seq C2 exon
AAAATGGATCCAAGTGGGGTCAAAGTGCTGGAAACAGCCGAGGACATCCAGGAGAGACGACAGCAGGTTCTGGATCGGTACCACCGCTTCAAGGAGCTCTCTACCTTGCGGCGGCAGAAACTGGAGGATTCCTATCGCTTCCAGTTTTTTCAGAGAGATGCTGAGGAGCTGGAGAAGTGGATTCAGGAGAAGCTTCAAGTTGCCTCTGATGAGAACTACAAAGACCCCACCAACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.159
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043516=Spectrin=PU(33.7=44.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000079640fB14262
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCCTCAGCAGCCCTCAG
R:
GATGTCCTCGGCTGTTTCCAG
Band lengths:
103-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]