GgaEX0028141 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5034242-5070442:+
Coord C1 exon
chr23:5034242-5034319
Coord A exon
chr23:5043907-5044028
Coord C2 exon
chr23:5070116-5070442
Length
122 bp
Sequences
Splice sites
3' ss Seq
GCCTTGCTTTTTGTTCACAGCAC
3' ss Score
8.81
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TCAAAAAGCAAATGGAACTGAAGTCCAGAGGGGTGAAGCTGATGCCAAGCAAGAACAGTAACCAGAAGACATCAGTAT
Seq A exon
CACGGATGTGTGATATGTACCTCCGTGGTCCCAGCGGTGTGATAACCTCCCCCAACTATCCCGTCCAATACGATAACAATGCCTACTGCGTGTGGGTCATCACGGCGCTCAACCCAGCCAAG
Seq C2 exon
TTTCCTGCTTTTTCAACTTCACCACCCCGTCTGGGATCGTGCTGTCGCCGAATTACCCCGAAGAGTACGGGAGCAGCTTGCACTGCGTTTGGTTGATCATAGCTAAACCCGAGAGCCGAATTCATTTGGCTTTCAATGATTTTGACGTGGAGCCTCAGTTTGATTTCCTAGCCGTGAAGGACGGCGGCACCGCGGAGTCTCCGGTGCTGGGCACCTTCTCAGGAAGCCAAATCCCCTCCTCGCTGACCAGCAGCGGCCACGTTGCCAGGCTGGAGTTCCAGACCGACCACTCCATGGAGAAGAGAGGCTTCAACATCACCTTCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602_MULTIEX1-3/6=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(33.9=90.2)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTGAAGTCCAGAGGGG
R:
CGTCCTTCACGGCTAGGAAAT
Band lengths:
249-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]