GgaEX0028142 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5034242-5070442:+
Coord C1 exon
chr23:5034242-5034319
Coord A exon
chr23:5049553-5049656
Coord C2 exon
chr23:5070116-5070442
Length
104 bp
Sequences
Splice sites
3' ss Seq
ACACACTGCATCTTTGCCAGGTT
3' ss Score
5.86
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
TCAAAAAGCAAATGGAACTGAAGTCCAGAGGGGTGAAGCTGATGCCAAGCAAGAACAGTAACCAGAAGACATCAGTAT
Seq A exon
GTTATCAAACTCACCTTTGAAGAATTTGAACTGGAGAGAGGGTACGACACCCTGACAGTGGGTGATGGAGGACAAGTGGGAGACCAGAAGTCTGTGCTGTACGT
Seq C2 exon
TTTCCTGCTTTTTCAACTTCACCACCCCGTCTGGGATCGTGCTGTCGCCGAATTACCCCGAAGAGTACGGGAGCAGCTTGCACTGCGTTTGGTTGATCATAGCTAAACCCGAGAGCCGAATTCATTTGGCTTTCAATGATTTTGACGTGGAGCCTCAGTTTGATTTCCTAGCCGTGAAGGACGGCGGCACCGCGGAGTCTCCGGTGCTGGGCACCTTCTCAGGAAGCCAAATCCCCTCCTCGCTGACCAGCAGCGGCCACGTTGCCAGGCTGGAGTTCCAGACCGACCACTCCATGGAGAAGAGAGGCTTCAACATCACCTTCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602_MULTIEX1-4/6=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=FE(31.2=100)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTGAAGTCCAGAGGGG
R:
CGTCCTTCACGGCTAGGAAAT
Band lengths:
249-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]