GgaEX0028897 @ galGal3
Exon Skipping
Gene
ENSGALG00000012526 | PRPF40A
Description
NA
Coordinates
chr7:37177432-37180071:-
Coord C1 exon
chr7:37179937-37180071
Coord A exon
chr7:37179516-37179560
Coord C2 exon
chr7:37177432-37178759
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATCCAATTTGCCAGATT
3' ss Score
5.87
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GATTCACCAGAATCTGATATTGAACGAGAGAAAGACAAAAAAGAAAGAGAGAGAGAAAGTGAAAAGGATAGAGCTAGACAAAGATCTGAATCAAAACATAAATCTCCGACTAAAAAACGACCTGGAAAAGATTCT
Seq A exon
ATTGATCTCAAAGGAGATGAGCAGGACAGCTGGTTGAACTCTGAG
Seq C2 exon
GGCAACTGGGACACCTCGGGCAGCGAGCTGAGCGAAGGGGAGCTGGAAAAGCAGAGGCGGACTCTTTTGGAACAACTGGATGAAGATCAATGAGAACGTTATTTATACCAAATATGTTTACATTGTGGCATAATAAAAGAAACCAATGTCTAATTCAGGATGTGGGTTCTGATATCCTGAGTTCCATTGTTGAAATTACGGTGGGTTTTAATTTGACCACATAAATACATCCAAGTACTCTTACGGGCCCGGCACCAAACCTACAGACATGAATGCAATTCGGAGTTAAAGCCGAGTGGTGTTGGGCAGTAATGGGTGCTCTGCTCCCCTGGAGGGAGTCCTGGAAGGGAACAGCGCCATGGGAGACGCCTGGGCTCTCACTGGACCTCACCTGCAGGCTGAGCAGAGCCTTGGCACCTTTCTAGCGAAGCATCCCTGCAGTGCACTCCTTCCTAGAAAGGCAGTACCTGTTCTTCCCGGCCGCGCAGGCAGGTAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526_MULTIEX1-3/3=2-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATAGAGCTAGACAAAGATCTGA
R:
TGTTCCAAAAGAGTCCGCCTC
Band lengths:
145-190
Functional annotations
There are 0 annotated functions for this event