GgaEX0018933 @ galGal3
Exon Skipping
Gene
ENSGALG00000012526 | PRPF40A
Description
NA
Coordinates
chr7:37177432-37181268:-
Coord C1 exon
chr7:37181207-37181268
Coord A exon
chr7:37179937-37180071
Coord C2 exon
chr7:37177432-37178759
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCCTTTATTACAAAGGAT
3' ss Score
6.94
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
Exon sequences
Seq C1 exon
AGAGAAGTTACAAGAAGTCAAAAAAACACAAGAAAAAGAGCAAGAAAAGAAGACATAAGTCC
Seq A exon
GATTCACCAGAATCTGATATTGAACGAGAGAAAGACAAAAAAGAAAGAGAGAGAGAAAGTGAAAAGGATAGAGCTAGACAAAGATCTGAATCAAAACATAAATCTCCGACTAAAAAACGACCTGGAAAAGATTCT
Seq C2 exon
GGCAACTGGGACACCTCGGGCAGCGAGCTGAGCGAAGGGGAGCTGGAAAAGCAGAGGCGGACTCTTTTGGAACAACTGGATGAAGATCAATGAGAACGTTATTTATACCAAATATGTTTACATTGTGGCATAATAAAAGAAACCAATGTCTAATTCAGGATGTGGGTTCTGATATCCTGAGTTCCATTGTTGAAATTACGGTGGGTTTTAATTTGACCACATAAATACATCCAAGTACTCTTACGGGCCCGGCACCAAACCTACAGACATGAATGCAATTCGGAGTTAAAGCCGAGTGGTGTTGGGCAGTAATGGGTGCTCTGCTCCCCTGGAGGGAGTCCTGGAAGGGAACAGCGCCATGGGAGACGCCTGGGCTCTCACTGGACCTCACCTGCAGGCTGAGCAGAGCCTTGGCACCTTTCTAGCGAAGCATCCCTGCAGTGCACTCCTTCCTAGAAAGGCAGTACCTGTTCTTCCCGGCCGCGCAGGCAGGTAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAAGAAAAGAAGACATAAGTCC
R:
TGTGGTCAAATTAAAACCCACCG
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]